RIO | resampled inference of orthologs

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phylogenomic analysis of a protein sequence

protein sequence query (cut and paste query here, fasta format or raw sequence are acceptable)

or select the query sequence file you wish to upload

species of query sequence (swiss-prot code)
pfam domain name (hmm search)

more advanced options

threshold for orthologies [%] (default: 0)
threshold for subtree-neighborings [%] (default: 0)
output ultra-paralogs (default: yes)
threshold for ultra-paralogies [%] (default: 50)
random number generator seed (for jumble in "neighbor") (default: 41)
sort priority
upload a user defined species tree (in NHX format)


christian zmasek + ajay khanna

last updated 11/01/06

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